Package: CNVRG 1.0.1

CNVRG: Dirichlet-Multinomial Modelling of Relative Abundance Data

Implements Dirichlet multinomial modelling of relative abundance data using functionality provided by the 'Stan' software. The purpose of this package is to provide a user friendly way to interface with 'Stan' that is suitable for those new to modelling. For more regarding the modelling mathematics and computational techniques we use see our publication in Molecular Ecology Resources titled "Dirichlet multinomial modelling outperforms alternatives for analysis of ecological count data" (Harrison et al. 2020 <doi:10.1111/1755-0998.13128>).

Authors:Joshua Harrison [aut, cre], Vivaswat Shastry [aut], W. John Calder [aut], C. Alex Buerkle [aut]

CNVRG_1.0.1.tar.gz
CNVRG_1.0.1.zip(r-4.7-x86_64)CNVRG_1.0.1.zip(r-4.7-arm64)CNVRG_1.0.1.zip(r-4.6-x86_64)CNVRG_1.0.1.zip(r-4.6-arm64)CNVRG_1.0.1.zip(r-4.5-x86_64)
CNVRG_1.0.1.tgz(r-4.6-x86_64)CNVRG_1.0.1.tgz(r-4.6-arm64)CNVRG_1.0.1.tgz(r-4.5-x86_64)CNVRG_1.0.1.tgz(r-4.5-arm64)
CNVRG_1.0.1.tar.gz(r-4.7-arm64)CNVRG_1.0.1.tar.gz(r-4.7-x86_64)CNVRG_1.0.1.tar.gz(r-4.6-arm64)CNVRG_1.0.1.tar.gz(r-4.6-x86_64)
CNVRG_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
CNVRG/json (API)

# Install 'CNVRG' in R:
install.packages('CNVRG', repos = c('https://jharrisonecoevo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jharrisonecoevo/cnvrg/issues

Uses libs:
  • onetbb– Parallelism library for C++
  • c++– GNU Standard C++ Library v3
Datasets:
  • fungi - Fungal endophytes of Astragalus lentiginosus grown near Reno, NV

On CRAN:

Conda:

onetbbcpp

3.15 score 2 stars 14 scripts 350 downloads 8 exports 56 dependencies

Last updated from:01cf0d0d69. Checks:13 WARNING, 2 OK. Indexed: yes.

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source / vignettesOK219
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macos-release-x86_64WARNING479
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windows-devel-arm64WARNING310
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windows-release-x86_64WARNING262
windows-oldrel-x86_64WARNING267
wasm-releaseOK174

Exports:cnvrg_HMCcnvrg_VIdiff_abunddiversity_calcextract_pi_quantilesextract_point_estimateindexerisd_transform

Dependencies:abindbackportsBHcallrcheckmatecliclustercpp11descdistributionalfarvergenericsggplot2gluegridExtragtableinlineisobandlabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsmgcvnlmenumDerivotelpermutepillarpkgbuildpkgconfigposteriorprocessxpsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolsS7scalesStanHeaderstensorAtibbleutf8vctrsveganviridisLitewithr